PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0028s0046.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 183aa    MW: 19661.8 Da    PI: 10.0944
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0028s0046.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.000713961123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ Cg+ Fs+   L  H  +H
  Kaladp0028s0046.1.p 39 FECKTCGRAFSSFQALGGHSASH 61
                         89*********998887777764 PP

2zf-C2H211.80.0007490112123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cg+ F     L  H+r+H
  Kaladp0028s0046.1.p  90 HECSICGMKFGLGQALGGHMRRH 112
                          78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.97E-838112No hitNo description
PROSITE profilePS5015711.9463967IPR007087Zinc finger, C2H2
PfamPF139127.1E-113964IPR007087Zinc finger, C2H2
SMARTSM003550.393961IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804162IPR007087Zinc finger, C2H2
PfamPF139126.1E-989113IPR007087Zinc finger, C2H2
SMARTSM003550.1290112IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.32890117IPR007087Zinc finger, C2H2
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MMKRGREDES STEADAAECL VRLSCASRNS AGSSGRVMFE CKTCGRAFSS FQALGGHSAS  60
HHKKPKPSPG EAATAMASEA VRVKAEPTVH ECSICGMKFG LGQALGGHMR RHRIELKGGG  120
VVGDRPRGIV SDQDAKLLVP VLRRSLSKNK RVMCMDLNLT PLENDLELLF GKMAPKVDRR  180
LV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047364.13e-51PREDICTED: zinc finger protein ZAT11-like
TrEMBLM9Z1Z03e-51M9Z1Z0_EUCGR; C2H2-type zinc finger protein 6
STRINGGLYMA13G19570.11e-43(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.13e-35C2H2 family protein